seandavi/awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

3,884 stars1,104 forksMIT

analysis-pipeline atac-seq awesome-list bioinformatics cell-clusters cell-differentiation cell-populations clustering data-integration data-visualization dimensionality-reduction gene-expression gene-expression-profiles python rna-seq-data rna-seq-experiments scrna-seq-data single-cell spatial-transcriptomics

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seandavi/awesome-single-cell has 3,884 GitHub stars.

It currently ranks #13082 daily, #14083 weekly, #17420 monthly by momentum on Trending Repos; its best-ever rank is #267.

Trending Repos first recorded it on Jun 1, 2026.

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#174200.0

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