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Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data

Non-comprehensive list of projects and resources related to open microscopy.

PhenoPixel: A web-based bioimage analysis platform for bacterial single-cell microscopy analytics.